miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|25816115|gb|BU308114.1|BU308114 ATCTGCCTCCTGATTCATAATGCAAACAAGAAGGACGCTGGGTGGTATACAGTATCTGCAGTCAACGGAGCAGGTGTGGC
CACGTGCCACGCCAGACTGGAGGTTGCAACACATACAAACAAGCCAGTTCCAGCGCCAAAGCAGCTACGAGTCCGACCAA
CTTTCAGCAAGTATTTGGCCCTCAATGGCAGAGGGCTGGATGTGAAACAAGCCTTCTCACCTGAGGGAGAGTTTCAGCGT
TTGGCTGAGCAGTCTGGACTGTATGAAAGCGATGAACTTTAACTGGAAACAAAGAGGAAAACTCATACCAACGAGAGACA
ACGCCAACATAGCTGCAGTTAACTGGTGATAGTTCTAATTAGCCAAATACCTATCTGTGTATTTTTACTGTGACTCTTGC
ACATTCTGCTGTTCCCATTTTACCACGTTAGATGATATTTCTATGGGTTGGTGAATATAACCATTTTCTGAGTATTGTAT
TTTAACGACAGAGGCTGAGCAGGCAGGCCGGTTAGCGCTCACAGCGCGGGTGGTTTCGGCCCCACCTGTGCTGGGTTACA
TGCTGAGGTAGATGGGTTTGTACTGCTTCTCTAATACCGCTCTTGATGAGAACTCTGTACTGTCTGATTACTAAAACCAA
ATAGAGTGT




Most similar to sp|Q9UBF9|MYOTI_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q6H849|NRL4_ORYSJ Bifunctional nitrilase/nitrile hydratase NIT4
           OS=Oryza sativa subsp. japonica GN=NIT4 PE=2 SV=1
          Length = 362

 Score = 97.1 bits (240), Expect(3) = 9e-28
 Identities = 48/57 (84%), Positives = 51/57 (89%)
 Frame = +3

Query: 306 VAMNGGADPSATTVRATVVQASTIFHDTPATLDXAERLIAEAAGYGSQLVVFPEAFI 476
           V MNGGAD  A TVRATVVQAST+F+DTPATLD AERLI EAAGYGSQLVVFPEAF+
Sbjct: 18  VEMNGGADSGAATVRATVVQASTVFYDTPATLDKAERLIEEAAGYGSQLVVFPEAFV 74



 Score = 34.3 bits (77), Expect(3) = 9e-28
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +1

Query: 535 KRQGKGAFRMYHASTIDVPGPKV 603
           K +GK  FR YHA+ I+VPGP+V
Sbjct: 95  KDKGKEEFRKYHAAAIEVPGPEV 117



 Score = 33.1 bits (74), Expect(3) = 9e-28
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = +2

Query: 467 SFY*GYPRGSTXXXXXXXXXXNPKDRGKE 553
           +F  GYPRGST          NPKD+GKE
Sbjct: 72  AFVGGYPRGSTFGFGANISIGNPKDKGKE 100


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9UBF9|MYOTI_HUMAN Myotilin OS=Homo sapiens GN=MYOT PE=1 SV=2
          Length = 498

 Score =  148 bits (373), Expect = 3e-35
 Identities = 71/93 (76%), Positives = 81/93 (87%)
 Frame = +1

Query: 1   ICLLIHNANKKDAGWYTVSAVNGAGVATCHARLEVATHTNKPVPAPKQLRVRPTFSKYLA 180
           + LLI + NKKDAGWYTVSAVN AGV TC+ RL+V    N+ +PAPKQLRVRPTFSKYLA
Sbjct: 406 VTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTLPAPKQLRVRPTFSKYLA 465

Query: 181 LNGRGLDVKQAFSPEGEFQRLAEQSGLYESDEL 279
           LNG+GL+VKQAF+PEGEFQRLA QSGLYES+EL
Sbjct: 466 LNGKGLNVKQAFNPEGEFQRLAAQSGLYESEEL 498